Deep Learning on Kyle's Blog

Deep Learning for Coder: Chapter 5

Tue, 16 Sep 2025 00:00:00 +0000

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import fastbook
fastbook.setup_book()

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from fastai.vision.all import *
path = untar_data(URLs.PETS)

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path.ls()

(#2) [Path('/root/.fastai/data/oxford-iiit-pet/annotations'),Path('/root/.fastai/data/oxford-iiit-pet/images')]

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pets = DataBlock(
 blocks=(ImageBlock, CategoryBlock),
 get_items=get_image_files,
 splitter=RandomSplitter(seed=42),
 get_y=using_attr(RegexLabeller(r"(.+)_\d+.jpg$"), "name"),
 item_tfms=Resize(460),
 batch_tfms=aug_transforms(size=224, min_scale=0.75),
)
dls = pets.dataloaders(path/"images")

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dls.show_batch(nrows=3, ncols=3)

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learn = cnn_learner(dls, resnet34, metrics=error_rate)
learn.fine_tune(2)

Downloading: "https://download.pytorch.org/models/resnet34-b627a593.pth" to /root/.cache/torch/hub/checkpoints/resnet34-b627a593.pth

epoch	train_loss	valid_loss	error_rate	time
0	1.497884	0.302666	0.087280	01:02

epoch	train_loss	valid_loss	error_rate	time
0	0.494630	0.309310	0.099459	01:04
1	0.310687	0.254076	0.084574	01:06

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x, y = dls.one_batch()

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preds, _ = learn.get_preds(dl = [(x,y)])
torch.argmax(preds[0])

tensor(10)

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acts = torch.randn((6,2))*2
acts

tensor([[ 0.2126, -0.6733],
 [ 0.5868, 1.8977],
 [-1.5544, 0.4964],
 [-0.5226, -0.6044],
 [ 0.4885, -0.1626],
 [-3.0538, -2.0372]])

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acts.sigmoid().sum(1).unsqueeze(1)

tensor([[0.8907],
 [1.5123],
 [0.7961],
 [0.7256],
 [1.0792],
 [0.1604]])

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(acts[:,0]-acts[:,1]).sigmoid().unsqueeze(1)

tensor([[0.7080],
 [0.2123],
 [0.1140],
 [0.5204],
 [0.6573],
 [0.2657]])

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def softmax(x): return torch.exp(x) / torch.exp(x).sum(dim=1, keepdim=True)
sm_acts = softmax(acts)

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sm_acts

tensor([[0.7080, 0.2920],
 [0.2123, 0.7877],
 [0.1140, 0.8860],
 [0.5204, 0.4796],
 [0.6573, 0.3427],
 [0.2657, 0.7343]])

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targ = tensor([0,1,0,0,1,1])
sm_acts[range(6),targ].unsqueeze(1)

tensor([[0.7080],
 [0.7877],
 [0.1140],
 [0.5204],
 [0.3427],
 [0.7343]])

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-sm_acts[range(6),targ].log().mean()

tensor(0.7981)

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F.nll_loss(acts.log_softmax(dim=1), targ)

tensor(0.7981)

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loss_func = nn.CrossEntropyLoss(reduction='none')
loss_func(acts, targ)

tensor([0.3452, 0.2387, 2.1718, 0.6531, 1.0708, 0.3088])

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interp = ClassificationInterpretation.from_learner(learn)
interp.plot_confusion_matrix(figsize=(12,12), dpi=60)

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interp.most_confused(min_val=5)

[('american_pit_bull_terrier', 'staffordshire_bull_terrier', np.int64(12)),
 ('Birman', 'Ragdoll', np.int64(7)),
 ('Egyptian_Mau', 'Bengal', np.int64(5)),
 ('american_pit_bull_terrier', 'american_bulldog', np.int64(5))]

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learn = vision_learner(dls, resnet34, metrics=error_rate)
learn.lr_find()

SuggestedLRs(valley=0.001737800776027143)

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learn = vision_learner(dls, resnet34, metrics=error_rate)
learn.fine_tune(2, base_lr=3e-3)

epoch	train_loss	valid_loss	error_rate	time
0	1.330929	0.305042	0.089986	01:07

epoch	train_loss	valid_loss	error_rate	time
0	0.523440	0.362486	0.104871	01:10
1	0.327184	0.269103	0.080514	01:06

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learn = vision_learner(dls, resnet34, metrics=error_rate)
learn.fit_one_cycle(3, 3e-2)

epoch	train_loss	valid_loss	error_rate	time
0	2.357152	3.695568	0.578484	00:12
1	1.188880	0.541915	0.169824	00:11
2	0.660204	0.358833	0.108931	00:11

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learn.unfreeze()

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learn.lr_find()

SuggestedLRs(valley=3.630780702224001e-05)

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learn.fit_one_cycle(6, lr_max=1e-6)

epoch	train_loss	valid_loss	error_rate	time
0	0.474540	0.356742	0.108931	00:12
1	0.472879	0.353283	0.110284	00:12
2	0.471576	0.347057	0.103518	00:12
3	0.464339	0.345362	0.100812	00:12
4	0.468930	0.342762	0.106225	00:12
5	0.452638	0.343595	0.103518	00:12

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learn = vision_learner(dls, resnet34, metrics=error_rate)
learn.fit_one_cycle(3, 3e-3)
learn.unfreeze()
learn.fit_one_cycle(12, lr_max=slice(1e-6, 1e-4))

epoch	train_loss	valid_loss	error_rate	time
0	1.127102	0.334892	0.097429	00:11
1	0.518909	0.252394	0.085927	00:11
2	0.327980	0.218656	0.075778	00:11

epoch	train_loss	valid_loss	error_rate	time
0	0.243455	0.213250	0.074425	00:12
1	0.233122	0.212131	0.073748	00:12
2	0.220011	0.202811	0.063599	00:12
3	0.220371	0.196318	0.062923	00:12
4	0.191108	0.200352	0.064953	00:12
5	0.166688	0.201582	0.066982	00:12
6	0.155857	0.196664	0.062923	00:12
7	0.138741	0.190374	0.060217	00:12
8	0.118107	0.192674	0.067659	00:12
9	0.130965	0.191735	0.065629	00:12
10	0.124963	0.191818	0.066982	00:12
11	0.122479	0.191197	0.064276	00:12

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learn.recorder.plot_loss()

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from fastai.callback.fp16 import *
learn = vision_learner(dls, resnet50, metrics=error_rate).to_fp16()
learn.fine_tune(6, freeze_epochs=3)

Downloading: "https://download.pytorch.org/models/resnet50-11ad3fa6.pth" to /root/.cache/torch/hub/checkpoints/resnet50-11ad3fa6.pth

epoch	train_loss	valid_loss	error_rate	time
0	2.191112	0.475555	0.154263	00:14
1	0.829924	0.294044	0.100812	00:13
2	0.550020	0.291130	0.096752	00:13

epoch	train_loss	valid_loss	error_rate	time
0	0.305628	0.236669	0.073748	00:14
1	0.242062	0.278092	0.081867	00:14
2	0.209351	0.231892	0.069689	00:14
3	0.133353	0.220406	0.064276	00:14
4	0.089182	0.202463	0.050744	00:14
5	0.065977	0.192152	0.052774	00:14

Deep Learning for Coder: Chapter 4

Thu, 11 Sep 2025 14:56:41 +1000

Environment Set-up

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import fastbook
from fastai.vision.all import *
from fastbook import *

fastbook.setup_book()
matplotlib.rc("image", cmap="Greys")

Load The Two Classes of Data

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path = untar_data(URLs.MNIST_SAMPLE)
Path.BASE_PATH = path
path.ls()

(#3) [Path('train'),Path('valid'),Path('labels.csv')]

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threes = [tensor(Image.open(i)) for i in (path / "train" / "3").ls()]
sevens = [tensor(Image.open(i)) for i in (path / "train" / "7").ls()]
threes_valid = [tensor(Image.open(i)) for i in (path / "valid" / "3").ls()]
sevens_valid = [tensor(Image.open(i)) for i in (path / "valid" / "7").ls()]
len(threes), len(sevens)

(6131, 6265)

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threes = torch.stack(threes).float() / 255
sevens = torch.stack(sevens).float() / 255
threes_valid = torch.stack(threes_valid).float() / 255
sevens_valid = torch.stack(sevens_valid).float() / 255
threes.shape, sevens.shape

(torch.Size([6131, 28, 28]), torch.Size([6265, 28, 28]))

Non-Parametric Method

Calculate an “average three”

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mean3 = threes.mean(0)
show_image(mean3)

Calculate an “average seven”

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mean7 = sevens.mean(0)
show_image(mean7)

Define a function that computes distance between two images and a function that judges if an image is three.

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def distance(a, b):
 return (a - b).abs().mean((-1, -2))


def is_3(x):
 return distance(x, mean3) < distance(x, mean7)

Compute how many threes are correctly classified into class three and how many seven are correctly classified into seven. (accuracy)

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is_3(threes_valid).float().mean(), (1 - is_3(sevens_valid).float()).float().mean()

(tensor(0.9168), tensor(0.9854))

Compute overall how many images are correctly classified.

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x = torch.cat([threes_valid, sevens_valid])
y = tensor([1] * len(threes_valid) + [0] * len(sevens_valid))
x.shape, y.shape

# ((distance(x, mean3) < distance(x, mean7)).float() == y).float().mean()

(torch.Size([2038, 28, 28]), torch.Size([2038]))

Linear Function and SGD

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train_x = torch.cat([threes, sevens]).view([-1, 28 * 28])
train_y = tensor([1] * len(threes) + [0] * len(sevens)).unsqueeze(-1)
valid_x = torch.cat([threes_valid, sevens_valid]).view([-1, 28 * 28])
valid_y = tensor([1] * len(threes_valid) + [0] * len(sevens_valid)).unsqueeze(-1)
train_x.shape, train_y.shape, valid_x.shape, valid_y.shape

(torch.Size([12396, 784]),
 torch.Size([12396, 1]),
 torch.Size([2038, 784]),
 torch.Size([2038, 1]))

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dset = list(zip(train_x, train_y))
dset_valid = list(zip(valid_x, valid_y))
dset[0][0].shape, dset[0][1].shape

dl = DataLoader(dset, batch_size=256, shuffle=true)
valid_dl = DataLoader(dset_valid, batch_size=256, shuffle=true)

Differentiate unsqueeze, cat and stack:

cat and stack operate on multiple tensors, combining them into a single tensor, whereas unsqueeze operates on a single tensor.
unsqueeze and stack introduce a new dimension to the tensor(s), while cat does not create new dimensions.
stack inserts a new dimension at the specified position, and its length equals the number of tensors being stacked.
cat concatenates tensors along a specified dimension, and the resulting dimension’s length is the sum of the lengths of all tensors along that dimension.
unsqueeze always inserts a new dimension of length 1 at the specified position.

For example:

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a, b = tensor([[1, 2, 3], [4, 5, 6]]), tensor([[7, 8, 9], [1, 2, 1]])
a.shape, b.shape

(torch.Size([2, 3]), torch.Size([2, 3]))

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a, b

(tensor([[1, 2, 3],
 [4, 5, 6]]),
 tensor([[7, 8, 9],
 [1, 2, 1]]))

cat these two tensors results in a tensor with a shape of either (4, 3) or (2, 6)

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torch.cat([a, b], 0).shape, torch.cat([a, b], 1).shape

(torch.Size([4, 3]), torch.Size([2, 6]))

stack these two tensors results in a tensor with a shape of either (2, 2, 3) or (2, 3, 2)

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torch.stack([a, b], 0).shape, torch.stack([a, b], 1).shape, torch.stack([a, b], 2).shape

(torch.Size([2, 2, 3]), torch.Size([2, 2, 3]), torch.Size([2, 3, 2]))

Note: although torch.stack([a, b], 0) and torch.stack([a, b], 1) produce tensors with the same shape, they have different content.

$$ \begin{matrix} [1 & 2 & 3] \\ [4 & 5 & 6] \end{matrix} \quad \begin{matrix} [7 & 8 & 9] \\ [1 & 2 & 1] \end{matrix} $$

torch.stack([a, b], 0) means stack whole matrices:

$$ \left[ \begin{matrix} [1 & 2 & 3] \\ [4 & 5 & 6] \end{matrix} \right] , \left[ \begin{matrix} [7 & 8 & 9] \\ [1 & 2 & 1] \end{matrix} \right] $$

torch.stack([a, b], 1) means stack rows:

$$ \begin{matrix} \textbf{[}[1 & 2 & 3]\quad[7 & 8 & 9]\textbf{]},\\ \\ \textbf{[}[4 & 5 & 6]\quad[1 & 2 & 1]\textbf{]} \end{matrix} $$

torch.stack([a, b], 2) means stack columns.

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torch.stack([a, b], 0), torch.stack([a, b], 1)

(tensor([[[1, 2, 3],
 [4, 5, 6]],
 
 [[7, 8, 9],
 [1, 2, 1]]]),
 tensor([[[1, 2, 3],
 [7, 8, 9]],
 
 [[4, 5, 6],
 [1, 2, 1]]]))

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def sigmoid(logits):
 return 1 / (1 + torch.exp(-logits))


def mnist_loss(logits, targets):
 probs = logits.sigmoid()
 # return ((probs - targets) ** 2).mean().sqrt()
 return torch.where(targets == 1, 1 - probs, probs).mean()


def calc_grad(x, y, f):
 preds = f(x)
 loss = mnist_loss(preds, y)
 loss.backward()


def train_epoch(f, params, lr):
 for xb, yb in dl:
 calc_grad(xb, yb, f)
 for p in params:
 with torch.no_grad():
 p -= lr * p.grad
 p.grad.zero_()


def batch_accuracy(logits, yb):
 probs = logits.sigmoid()
 return ((probs > 0.5) == yb).float().mean()


def validation_epoch(f):
 accs = [batch_accuracy(f(xb), yb) for xb, yb in valid_dl]
 return round(torch.stack(accs).mean().item(), 4)

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def init_params(size, std=1.0):
 return (torch.randn(size) * std).requires_grad_()


# column vector
weights = init_params((28 * 28, 1))
bias = init_params(1)


def linear(x):
 return x @ weights + bias


for i in range(20):
 train_epoch(linear, (weights, bias), 1e-1)
 print(validation_epoch(linear))

Optimizer

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linear_model = nn.Linear(28 * 28, 1)
w, b = linear_model.parameters()
w.shape, b.shape

(torch.Size([1, 784]), torch.Size([1]))

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class BasicOptimizer:
 def __init__(self, params, lr):
 self.params = list(params)
 self.lr = lr

 def step(self, *args, **kwargs):
 for p in self.params:
 with torch.no_grad():
 p -= self.lr * p.grad

 def zero_grad(self, *args, **kwargs):
 for p in self.params:
 p.grad = None


opt = BasicOptimizer(linear_model.parameters(), 1e-2)


def train_epoch(model):
 for xb, yb in dl:
 calc_grad(xb, yb, model)
 opt.step()
 opt.zero_grad()


validation_epoch(linear_model)

0.5231

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for i in range(20):
 print(validation_epoch(linear_model))
 train_epoch(linear_model)

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linear_model = nn.Linear(28 * 28, 1)
opt = SGD(linear_model.parameters(), 1.0)
for i in range(20):
 train_epoch(linear_model)
 print(validation_epoch(linear_model))

Learner

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dls = DataLoaders(dl, valid_dl)
learn = Learner(
 dls,
 nn.Linear(28 * 28, 1),
 opt_func=SGD,
 loss_func=mnist_loss,
 metrics=batch_accuracy,
)
learn.fit(10, lr=1.0)

epoch	train_loss	valid_loss	batch_accuracy	time
0	0.057635	0.041314	0.971050	00:00
1	0.039915	0.034953	0.974975	00:00
2	0.032067	0.032012	0.974975	00:00
3	0.027766	0.029371	0.977429	00:00
4	0.025469	0.028556	0.977429	00:00
5	0.023680	0.027128	0.978410	00:00
6	0.022530	0.026477	0.978410	00:00
7	0.021128	0.025687	0.978410	00:00
8	0.020596	0.024973	0.978410	00:00
9	0.020155	0.024411	0.979882	00:00

Nonlinearity

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simple_net = nn.Sequential(nn.Linear(28 * 28, 30), nn.ReLU(), nn.Linear(30, 1))
learn = Learner(dls, simple_net, mnist_loss, SGD, metrics=batch_accuracy)
learn.fit(40, 0.1)

epoch	train_loss	valid_loss	batch_accuracy	time
0	0.209871	0.085825	0.965653	00:00
1	0.102153	0.052868	0.968106	00:00
2	0.064107	0.043419	0.970069	00:00
3	0.047004	0.038965	0.970559	00:00
4	0.038722	0.036753	0.972522	00:00
5	0.033846	0.034248	0.972522	00:00
6	0.030684	0.032698	0.973994	00:00
7	0.028295	0.031133	0.975957	00:00
8	0.026498	0.030240	0.974975	00:00
9	0.025480	0.029235	0.975957	00:00
10	0.024493	0.028573	0.976938	00:00
11	0.023539	0.028091	0.976448	00:00
12	0.022644	0.027519	0.976938	00:00
13	0.021782	0.026868	0.977429	00:00
14	0.021953	0.026348	0.977920	00:00
15	0.021738	0.025783	0.978901	00:00
16	0.021042	0.025252	0.979392	00:00
17	0.020344	0.024917	0.978901	00:00
18	0.019776	0.024747	0.978901	00:00
19	0.019557	0.024295	0.978901	00:00
20	0.019418	0.024097	0.978901	00:00
21	0.018741	0.023782	0.978901	00:00
22	0.018383	0.023266	0.979392	00:00
23	0.018047	0.023283	0.979882	00:00
24	0.017762	0.023139	0.979882	00:00
25	0.017672	0.022712	0.979882	00:00
26	0.017658	0.022521	0.980864	00:00
27	0.017558	0.022226	0.980864	00:00
28	0.017126	0.022203	0.980864	00:00
29	0.017070	0.021634	0.980864	00:00
30	0.016443	0.021636	0.981354	00:00
31	0.016697	0.021468	0.981354	00:00
32	0.016811	0.021725	0.981845	00:00
33	0.016300	0.021180	0.982336	00:00
34	0.016316	0.021147	0.981845	00:00
35	0.015825	0.020846	0.982336	00:00
36	0.015894	0.020525	0.982336	00:00
37	0.015442	0.020475	0.982336	00:00
38	0.015356	0.020404	0.982336	00:00
39	0.015186	0.020286	0.982336	00:00

Deeper

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dls = ImageDataLoaders.from_folder(path)
learn = vision_learner(
 dls, resnet18, pretrained=False, loss_func=F.cross_entropy, metrics=accuracy
)
learn.fit_one_cycle(1, 0.1)

epoch	train_loss	valid_loss	accuracy	time
0	0.059510	0.017087	0.992640	00:12

Questionnaire

How is a grayscale image represented on a computer? How about a color image?

each pixel is represented by a number from 0 to 255. 0 represents black and 255 represents white. pixels of color image are represented by three colors: red, green and blue (RGB).
How are the files and folders in the MNIST_SAMPLE dataset structured? Why?

tree structure
Explain how the “pixel similarity” approach to classifying digits works.

mean3 and mean7 can be considered as “standard shapes”. if the average distance between an image’s pixels and mean3’s pixels is smaller, it is probably a three and vice versa.
What is a list comprehension? Create one now that selects odd numbers from a list and doubles them.

Create a python list within one line.
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l = [1, 4, 3, 6, 8, 9, 10, 3, 4] [i * 2 for i in l if i % 2 != 0]
```
[2, 6, 18, 6]
```
What is a “rank-3 tensor”?

a tensor that has three dimensions, for example:
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[[[1, 2], [3, 4]], [[5, 6], [7, 8]]]
```
[[[1, 2], [3, 4]], [[5, 6], [7, 8]]]
```
What is the difference between tensor rank and shape? How do you get the rank from the shape?

rank is the length of shape, len(shape).
What are RMSE and L1 norm?

RMSE uses square power to avoid cancelling out while L1 norm uses absolute value to do so.
How can you apply a calculation on thousands of numbers at once, many thousands of times faster than a Python loop?

Using np.array or tensor and broadcasting

Create a 3×3 tensor or array containing the numbers from 1 to 9. Double it. Select the bottom-right four numbers.

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import numpy as np

a = np.arange(1, 10).reshape(3, 3)
print(a)
a = a * 2
print(a[-2:, -2:])

[[1 2 3]
 [4 5 6]
 [7 8 9]]
[[10 12]
 [16 18]]

What is broadcasting?
Are metrics generally calculated using the training set, or the validation set? Why?

they are generally calculated using the validation set because it refects the generalization ability of a model
What is SGD?

stochastic: stochastically sample batchs from the dataset gradient: update parameters according to its gradient descent: the loss function is convex thus finding minimum descenting
Why does SGD use mini-batches?

Using the whole dataset is computationally expensive and using on data point results in unstable gradient. Using mini-batches is a compromise between them.
What are the seven steps in SGD for machine learning?
How do we initialize the weights in a model?

randomly
What is “loss”?

loss funtions measure the difference between a model’s predictions and the true target values. It provides a quantitative way to evaluate how well a model is performing. lower loss means better performance.
Why can’t we always use a high learning rate?

because it my cause the optimization process to overshoot the minimum. In extreme cases, the loss even increase or diverge instead of decreasing.
What is a “gradient”?
Do you need to know how to calculate gradients yourself?

No, I don’t. Even though I know.
Why can’t we use accuracy as a loss function?

because accuracy is not a continuous function with respect to the model’s parameters, which means when parameters’ value shift a bit, the accuracy won’t change, preventing calculating the gradient.

Draw the sigmoid function. What is special about its shape?

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import numpy as np
import matplotlib.pyplot as plt


def sigmoid(x):
 return 1 / (1 + np.exp(-x))


plt.plot(np.arange(-3, 3, 0.1), sigmoid(np.arange(-3, 3, 0.1)))
plt.show()

Its domain is $(-\infty, +\infty)$, and its range is $(0, 1)$. This means it squashes any real value into the interval $(0, 1)$, which makes it suitable for representing probabilities.

What is the difference between a loss function and a metric?

the loss function is used for the model while a metric should be meaingful for humans.
What is the function to calculate new weights using a learning rate?
What does the DataLoader class do?
Write pseudocode showing the basic steps taken in each epoch for SGD.
Create a function that, if passed two arguments [1,2,3,4] and 'abcd', returns [(1, 'a'), (2, 'b'), (3, 'c'), (4, 'd')]. What is special about that output data structure?
What does view do in PyTorch?
What are the “bias” parameters in a neural network? Why do we need them?
What does the @ operator do in Python?
What does the backward method do?
Why do we have to zero the gradients?
What information do we have to pass to Learner?
Show Python or pseudocode for the basic steps of a training loop.
What is “ReLU”? Draw a plot of it for values from -2 to +2.
What is an “activation function”?
What’s the difference between F.relu and nn.ReLU?
The universal approximation theorem shows that any function can be approximated as closely as needed using just one nonlinearity. So why do we normally use more?